1.9

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index 0e8a121793823677186d67e5d3cd255dd7ec47d1..7890d93db045be399a2854d5d17b314fb748358d 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -53,12 +53,13 @@ private:
        ReadMatrix* readMatrix;
        FormatMatrix* formatMatrix;
        NameAssignment* nameMap;
-       string filename, fastafile, listfile, namefile, groupfile, label, sorted, phylipfile, columnfile, distFile, format;
+       string filename, fastafile, listfile, namefile, groupfile, label, sorted, phylipfile, columnfile, distFile, format, outputDir;
        ofstream out;
        ifstream in, inNames, inRow;
        bool abort, allLines, groupError, large;
        set<string> labels; //holds labels to be used
        map<string, int> nameToIndex;  //maps sequence name to index in sparsematrix
+       vector<string> outputNames;
        float cutoff;
        int precision;
        vector<SeqMap> seqVec;                  // contains maps with sequence index and distance