modified some calculators and other stuff - pds

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index d0343daa3cb647957e694cfa101ec5406edf3304..706b219917eb89c99652b8e024421869eac123c1 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -8,13 +8,15 @@
  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
+ 
+ /* The get.oturep command outputs a .fastarep file for each distance you specify, selecting one OTU representative for each bin. */
 
 #include "command.hpp"
 #include "globaldata.hpp"
 #include "sparsematrix.hpp"
 #include "listvector.hpp"
 #include "inputdata.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "fastamap.h"
 
 
@@ -34,7 +36,7 @@ private:
        SparseMatrix* matrix;
        ListVector* list;
        ListVector* listOfNames;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        InputData* input;
        FastaMap* fasta;
        string filename, fastafile, namesfile;