if (sequence != "not found") {
if (sorted == "") { //print them out
- rep = rep + "|" + toString(i+1);
+ rep = rep + "\t" + toString(i+1);
rep = rep + "|" + toString(binsize);
if (groupfile != "") {
rep = rep + "|" + group;
//print them
for (int i = 0; i < reps.size(); i++) {
string sequence = fasta->getSequence(reps[i].name);
- string outputName = reps[i].name + "|" + toString(reps[i].bin);
+ string outputName = reps[i].name + "\t" + toString(reps[i].bin);
outputName = outputName + "|" + toString(reps[i].size);
if (groupfile != "") {
outputName = outputName + "|" + reps[i].group;
out.close();
out2.close();
+ remove(filename.c_str());
rename(tempNameFile.c_str(), filename.c_str());
return 0;