outputNames.push_back(matrixName); outputTypes["matrix"].push_back(matrixName);
findQ.printZMatrix(matrixName, thisGroups);
- findQ.printRelAbund(relabund, m->currentBinLabels);
+ findQ.printRelAbund(relabund, m->currentSharedBinLabels);
if(optimizegap != -1 && (numPartitions - minPartition) >= optimizegap && numPartitions >= minpartitions){
string tempDoneFile = m->getRootName(m->getSimpleName(sharedfile)) + toString(processID) + ".done.temp";