added odum, canberra, structchi2, structchord, structeuclidean, gower, hellinger...

[mothur.git] / getlistcountcommand.h

diff --git a/getlistcountcommand.h b/getlistcountcommand.h
index 196d245002498043dd8a32d11de45c5e1eb7c0cb..60d28cc6a351011fdc34af98189025af5d26f487 100644 (file)
--- a/getlistcountcommand.h
+++ b/getlistcountcommand.h
@@ -21,8 +21,13 @@ class GlobalData;
 class GetListCountCommand : public Command {
        
 public:
-       GetListCountCommand(string);    
+       GetListCountCommand(string);
+       GetListCountCommand();  
        ~GetListCountCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();    
        
@@ -34,9 +39,10 @@ private:
        
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string label, listfile, outputDir;
+       string label, listfile, outputDir, sort;
        ofstream out;
        vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        
        void process(ListVector*);
 };