paralellized seq.error and dist.shared added some error checks to libshuff and dist...

[mothur.git] / getlineagecommand.h

diff --git a/getlineagecommand.h b/getlineagecommand.h
index 6375b9483fb335bafde123f3e99e4620c2614234..ca84bf2fad3e11e60808daa15230b5674a4a7849 100644 (file)
--- a/getlineagecommand.h
+++ b/getlineagecommand.h
@@ -24,6 +24,7 @@ class GetLineageCommand : public Command {
                string getCommandName()                 { return "get.lineage";                         }
                string getCommandCategory()             { return "Phylotype Analysis";          }
                string getHelpString(); 
+               string getCitation() { return "http://www.mothur.org/wiki/Get.lineage"; }
        
                int execute(); 
                void help() { m->mothurOut(getHelpString()); }  
@@ -31,7 +32,7 @@ class GetLineageCommand : public Command {
        
        private:
                set<string> names;
-               vector<string> outputNames;
+               vector<string> outputNames, listOfTaxons;
                string fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir, taxons;
                bool abort, dups;