public:
GetLineageCommand(string);
- ~GetLineageCommand(){};
- int execute();
- void help();
-
+ GetLineageCommand();
+ ~GetLineageCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "get.lineage"; }
+ string getCommandCategory() { return "Phylotype Analysis"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
+
private:
set<string> names;
vector<string> outputNames;
int readList();
int readTax();
string removeConfidences(string);
+ vector< map<string, float> > getTaxons(string);
};
#endif