* Mothur
*
* Created by Thomas Ryabin on 1/30/09.
- * Copyright 2009 __MyCompanyName__. All rights reserved.
+ * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
-class GlobalData;
class GetlabelCommand : public Command {
public:
+ GetlabelCommand(string);
GetlabelCommand();
- ~GetlabelCommand();
- int execute();
+ ~GetlabelCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "get.label"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+ string getDescription() { return "outputs labels"; }
+
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
- GlobalData* globaldata;
- string filename;
+ string inputfile, listfile, rabundfile, sabundfile, format;
+ bool abort;
+ vector<string> outputNames;
};
-#endif
\ No newline at end of file
+#endif