fixed bug with dist.shared subsampling. added mode parameter to dist.shared so...

[mothur.git] / getlabelcommand.h

diff --git a/getlabelcommand.h b/getlabelcommand.h
index 3e18026f327d1836a8f2d623c10ad1c966a21525..c5dc1a119969e3ac10b0462c4ad5090bee1333f3 100644 (file)
--- a/getlabelcommand.h
+++ b/getlabelcommand.h
@@ -11,21 +11,32 @@
  */
 
 #include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
 
-class GlobalData;
 
 class GetlabelCommand : public Command {
 public:
        GetlabelCommand(string);
-       ~GetlabelCommand();
-       int execute();
-       void help();
+       GetlabelCommand();
+       ~GetlabelCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "get.label";                           }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+       string getDescription()         { return "outputs labels"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
-       GlobalData* globaldata;
-       string filename;
+       string inputfile, listfile, rabundfile, sabundfile, format;
        bool abort;
+       vector<string> outputNames;
 };
 
 #endif