*/
#include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
-class GlobalData;
class GetlabelCommand : public Command {
public:
GetlabelCommand(string);
- GetlabelCommand(){}
- ~GetlabelCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ GetlabelCommand();
+ ~GetlabelCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "get.label"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+ string getOutputPattern(string) { return ""; }
+ string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+ string getDescription() { return "outputs labels"; }
+
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
- GlobalData* globaldata;
- string filename;
+ string inputfile, listfile, rabundfile, sabundfile, format;
bool abort;
vector<string> outputNames;
- map<string, vector<string> > outputTypes;
};
#endif