if(option == "help") { help(); abort = true; }
else {
- if (option != "") { cout << "There are no valid parameters for the get.label command." << endl; abort = true; }
-
- if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { cout << "You must read a list, sabund or rabund before you can use the get.label command." << endl; abort = true; }
+ if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { mothurOut("You must read a list, sabund or rabund before you can use the get.label command."); mothurOutEndLine(); abort = true; }
}
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function GetlabelCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "GetlabelCommand", "GetlabelCommand");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the GetlabelCommand class function GetlabelCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
-
}
//**********************************************************************************************************************
void GetlabelCommand::help(){
try {
- cout << "The get.label command can only be executed after a successful read.otu command." << "\n";
- cout << "You may not use any parameters with the get.label command." << "\n";
- cout << "The get.label command should be in the following format: " << "\n";
- cout << "get.label()" << "\n";
- cout << "Example get.label()." << "\n";
+ mothurOut("The get.label command can only be executed after a successful read.otu command.\n");
+ mothurOut("You may not use any parameters with the get.label command.\n");
+ mothurOut("The get.label command should be in the following format: \n");
+ mothurOut("get.label()\n");
+ mothurOut("Example get.label().\n");
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "GetlabelCommand", "help");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the GetlabelCommand class function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
//**********************************************************************************************************************
if(count > numBins)
count = 0;
if(count == 0) {
- cout << label << "\n";
+ mothurOut(label); mothurOutEndLine();
in >> numBins;
}
in >> label;
count++;
}
+
+ in.close();
return 0;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "GetlabelCommand", "execute");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the GetlabelCommand class function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}