GetGroupsCommand(string);
GetGroupsCommand();
~GetGroupsCommand(){}
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+
+ vector<string> setParameters();
+ string getCommandName() { return "get.groups"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
set<string> names;
string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups;
bool abort;
vector<string> outputNames, Groups;
- map<string, vector<string> > outputTypes;
GroupMap* groupMap;
int readFasta();