bug fixes

[mothur.git] / getgroupcommand.h

diff --git a/getgroupcommand.h b/getgroupcommand.h
index 496d0c9c91d2970ecbef50977ff78e8795526538..fb3e810666320ea2cd1c32d4b14b0c2cac08c995 100644 (file)
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -15,16 +15,25 @@
 
 class GetgroupCommand : public Command {
 public:
+       GetgroupCommand(string);
        GetgroupCommand();
        ~GetgroupCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
+       void help();
        
 private:
        GlobalData* globaldata;
        GroupMap* groupMap;
        string outputFile, sharedfile;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        ofstream out;
        ifstream in;
+       bool abort;
 
 };