chimera.slayer

[mothur.git] / getgroupcommand.h

diff --git a/getgroupcommand.h b/getgroupcommand.h
index 26190b50139745531e2b8ae06201251c73f530aa..79dd8057216ec17fcd706d5a6a480c461161a458 100644 (file)
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -11,21 +11,29 @@
  */
 
 #include "command.hpp"
-#include "readmatrix.hpp"
-
-class GlobalData;
 
 class GetgroupCommand : public Command {
 public:
+       GetgroupCommand(string);
        GetgroupCommand();
-       ~GetgroupCommand();
-       int execute();
+       ~GetgroupCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "get.group";                           }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getHelpString(); 
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
-       GlobalData* globaldata;
-       GroupMap* groupMap;
-       string outputFile;
+       
+       string outputFile, sharedfile, outputDir;
+       vector<string> outputNames;
        ofstream out;
+       ifstream in;
+       bool abort;
 
 };