if (abort == false) {
//open shared file
sharedfile = globaldata->getSharedFile();
- openInputFile(sharedfile, in);
+ m->openInputFile(sharedfile, in);
//open output file
- if (outputDir == "") { outputDir += hasPath(sharedfile); }
- outputFile = outputDir + getRootName(getSimpleName(sharedfile)) + "bootGroups";
- openOutputFile(outputFile, out);
+ if (outputDir == "") { outputDir += m->hasPath(sharedfile); }
+ outputFile = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + "bootGroups";
+ m->openOutputFile(outputFile, out);
}
}
in >> inputData;
}
+ if (m->control_pressed) { in.close(); out.close(); remove(outputFile.c_str()); return 0; }
+
if (in.eof() != true) { in >> nextLabel; }
//read the rest of the groups info in
while ((nextLabel == holdLabel) && (in.eof() != true)) {
+ if (m->control_pressed) { in.close(); out.close(); remove(outputFile.c_str()); return 0; }
+
in >> groupN >> num;
count++;
in.close();
out.close();
+ if (m->control_pressed) { remove(outputFile.c_str()); return 0; }
+
m->mothurOutEndLine();
m->mothurOut("Output File Name: "); m->mothurOutEndLine();
m->mothurOut(outputFile); m->mothurOutEndLine();