m->setTaxonomyFile("");
}else if (types[i] == "flow") {
m->setFlowFile("");
+ }else if (types[i] == "biom") {
+ m->setBiomFile("");
+ }else if (types[i] == "counttable") {
+ m->setCountTableFile("");
}else if (types[i] == "processors") {
m->setProcessors("1");
}else if (types[i] == "all") {