fixed subsample name file name issue. added count parameter to cluster command....

[mothur.git] / getcurrentcommand.cpp

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index ca832314d66dbe371e314db292ab6f441d2ee351..86046b64375ebd151c27e5909c0efdc9d0149bbf 100644 (file)
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -140,6 +140,8 @@ int GetCurrentCommand::execute(){
                                        m->setFlowFile("");
                 }else if (types[i] == "biom") {
                                        m->setBiomFile("");
+                }else if (types[i] == "count") {
+                                       m->setCountTableFile("");
                                }else if (types[i] == "processors") {
                                        m->setProcessors("1");
                                }else if (types[i] == "all") {