//loop through each command outputting info
for (it = commands.begin(); it != commands.end(); it++) {
- if (m->control_pressed) { m->mothurOut("[ERROR]: did not complete making the file."); m->mothurOutEndLine(); out.close(); remove((output+".temp").c_str()); }
+ if (m->control_pressed) { m->mothurOut("[ERROR]: did not complete making the file."); m->mothurOutEndLine(); out.close(); m->mothurRemove((output+".temp")); }
Command* thisCommand = commandFactory->getCommand(it->first);
out2.close();
m->appendFiles(output+".temp", output);
- remove((output+".temp").c_str());
+ m->mothurRemove((output+".temp"));
m->mothurOutEndLine();
m->mothurOut("Output File Names: "); m->mothurOutEndLine();