#include "mothur.h"
#include "groupmap.h"
-#include "globaldata.hpp"
#include "progress.hpp"
class FullMatrix {
public:
- FullMatrix(){ m = MothurOut::getInstance(); }
- FullMatrix(ifstream&);
+ //FullMatrix(){ m = MothurOut::getInstance(); }
+ FullMatrix(ifstream&, GroupMap*, bool);
~FullMatrix(){};
int getNumSeqs();
int numSeqs;
int numGroups;
int numUserGroups;
- GlobalData* globaldata;
+ bool sim;
MothurOut* m;
};