//**********************************************************************************************************************
bool FlowData::getNext(ifstream& flowFile){
-
try {
+
seqName = getSequenceName(flowFile);
- flowFile >> endFlow;
+ if (m->debug) { m->mothurOut("[DEBUG]: flow = " + seqName + " "); }
+ flowFile >> endFlow;
+ if (m->debug) { m->mothurOut(toString(endFlow) + " "); }
if (!m->control_pressed) {
- for(int i=0;i<numFlows;i++) { flowFile >> flowData[i]; }
+ if (m->debug) { m->mothurOut(" "); }
+ for(int i=0;i<numFlows;i++) {
+ flowFile >> flowData[i];
+ if (m->debug) { m->mothurOut(toString(flowData[i]) + " "); }
+ }
+ if (m->debug) { m->mothurOut("\n"); }
updateEndFlow();
translateFlow();
m->gobble(flowFile);