void help() { m->mothurOut(getHelpString()); }
private:
- bool abort, pickedGroups, allLines, makeRare;
+ bool abort, pickedGroups, allLines, makeRare, keepties;
set<string> labels; //holds labels to be used
string groups, label, outputDir, sharedfile;
vector<string> Groups, outputNames;
- int minAbund, minTotal;
- float minPercent;
+ int minAbund, minTotal, minSamples;
+ float minPercent, minPercentSamples, rarePercent;
int processShared(vector<SharedRAbundVector*>&);