*** empty log message ***

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index b59d0a4b4cfa1ce7f7d86deb48b90515f5cc965a..924c36627fec65abd777c5ae530bf154583e954f 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -11,14 +11,12 @@
  */
 
 #include "command.hpp"
-#include "mothur.h"
 #include "globaldata.hpp"
 #include "readfasta.h"
 #include "readnexus.h"
 #include "readclustal.h"
 #include "readseqsphylip.h"
 
-using namespace std;
 
 class FilterSeqsCommand : public Command {
 
@@ -28,10 +26,10 @@ public:
        int execute();  
        
 private:
-       void doTrump();
-       void doSoft();
        void doHard();
-       void doVertical();
+       void doTrump(Sequence);
+       void doSoft(Sequence);
+       void doVertical(Sequence);
        string filter;  
        int alignmentLength;