OptionParser parser(option);
map<string,string> parameters = parser.getParameters();
- ValidParameters validParameter;
+ ValidParameters validParameter("filter.seqs");
map<string,string>::iterator it;
//check to make sure all parameters are valid for command
#ifdef USE_MPI
int pid, start, end, numSeqsPerProcessor, num;
int tag = 2001;
- vector<long>MPIPos;
+ vector<unsigned long int>MPIPos;
MPI_Status status;
MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running
MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
-
+ cout << pid << "is in create filter " << endl;
MPI_File outMPI;
MPI_File tempMPI;
MPI_File inMPI;
}
#ifdef USE_MPI
/**************************************************************************************/
-int FilterSeqsCommand::driverMPIRun(int start, int num, MPI_File& inMPI, MPI_File& outMPI, vector<long>& MPIPos) {
+int FilterSeqsCommand::driverMPIRun(int start, int num, MPI_File& inMPI, MPI_File& outMPI, vector<unsigned long int>& MPIPos) {
try {
string outputString = "";
int count = 0;
#ifdef USE_MPI
int pid, numSeqsPerProcessor, num;
int tag = 2001;
- vector<long> MPIPos;
+ vector<unsigned long int> MPIPos;
MPI_Status status;
MPI_File inMPI;
}
#ifdef USE_MPI
/**************************************************************************************/
-int FilterSeqsCommand::MPICreateFilter(int start, int num, Filters& F, MPI_File& inMPI, vector<long>& MPIPos) {
+int FilterSeqsCommand::MPICreateFilter(int start, int num, Filters& F, MPI_File& inMPI, vector<unsigned long int>& MPIPos) {
try {
MPI_Status status;