inFile.close();
outFile.close();
- remove(outName.c_str());
+ m->mothurRemove(outName);
}
/***********************************************************************/
void ThreeColumnFile::initFile(string label){
try {
if(counter != 0){
- openOutputFile(outName, outFile);
- openInputFile(inName, inFile);
+ m->openOutputFile(outName, outFile);
+ m->openInputFile(inName, inFile);
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t' << label << "\tlci\thci" << endl;
}
else{
- openOutputFile(outName, outFile);
+ m->openOutputFile(outName, outFile);
outFile << "numsampled\t" << label << "\tlci\thci" << endl;
}
try {
if(counter != 0){
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << setprecision(4) << '\t' << data[0] << '\t' << data[1] << '\t' << data[2] << endl;
}
}
counter = 1;
- remove(inName.c_str());
+ m->mothurRemove(inName);
renameOk = rename(outName.c_str(), inName.c_str());
//renameFile(outName, inName);
inFile.close();
outFile.close();
- remove(outName.c_str());
+ m->mothurRemove(outName);
}
/***********************************************************************/
void ColumnFile::initFile(string label, vector<string> tags){
try {
if(counter != 0){
- openOutputFile(outName, outFile);
- openInputFile(inName, inFile);
+ m->openOutputFile(outName, outFile);
+ m->openInputFile(inName, inFile);
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t';
for(int i = 0; i < tags.size(); i++) {
outFile << endl;
}
else{
- openOutputFile(outName, outFile);
+ m->openOutputFile(outName, outFile);
for(int i = 0; i < tags.size(); i++) {
outFile << label + tags[i] << '\t';
}
if(counter != 0){
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t' << setprecision(6) << data[0] << setprecision(iters.length());
for (int i = 1; i< data.size(); i++) {
}
counter = 1;
- remove(inName.c_str());
+ m->mothurRemove(inName);
renameOk = rename(outName.c_str(), inName.c_str());
//renameFile(outName, inName);
inFile.close();
outFile.close();
- remove(outName.c_str());
+ m->mothurRemove(outName);
}
/***********************************************************************/
void SharedThreeColumnFile::initFile(string label){
try {
if(counter != 0){
- openOutputFile(outName, outFile);
- openInputFile(inName, inFile);
+ m->openOutputFile(outName, outFile);
+ m->openInputFile(inName, inFile);
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t' << label << "\tlci\thci" << endl;
}
else{
- openOutputFile(outName, outFile);
+ m->openOutputFile(outName, outFile);
outFile << "numsampled\t" << groupLabel << '\t' << label << "\tlci\thci" << endl;
}
try {
if(counter != 0){
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << setprecision(4) << '\t' << data[0] << '\t' << data[1] << '\t' << data[2] << endl;
}
}
counter = 1;
- remove(inName.c_str());
+ m->mothurRemove(inName);
renameOk = rename(outName.c_str(), inName.c_str());
//renameFile(outName, inName);
inFile.close();
outFile.close();
- remove(outName.c_str());
+ m->mothurRemove(outName);
}
/***********************************************************************/
void OneColumnFile::initFile(string label){
try {
if(counter != 0){
- openOutputFile(outName, outFile);
- openInputFile(inName, inFile);
+ m->openOutputFile(outName, outFile);
+ m->openInputFile(inName, inFile);
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t' << label << endl;
}
else{
- openOutputFile(outName, outFile);
+ m->openOutputFile(outName, outFile);
outFile << "numsampled\t" << label << endl;
}
try {
if(counter != 0){
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << setprecision(4) << '\t' << data[0] << endl;
}
}
counter = 1;
- remove(inName.c_str());
+ m->mothurRemove(inName);
renameOk = rename(outName.c_str(), inName.c_str());
//renameFile(outName, inName);
inFile.close();
outFile.close();
- remove(outName.c_str());
+ m->mothurRemove(outName);
}
/***********************************************************************/
void SharedOneColumnFile::initFile(string label){
try {
if(counter != 0){
- openOutputFile(outName, outFile);
- openInputFile(inName, inFile);
+ m->openOutputFile(outName, outFile);
+ m->openInputFile(inName, inFile);
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << '\t' << label << endl;
}
else{
- openOutputFile(outName, outFile);
+ m->openOutputFile(outName, outFile);
outFile << "sampled\t" << label << endl;
}
}
if(counter != 0){
string inputBuffer;
- inputBuffer = getline(inFile);
+ inputBuffer = m->getline(inFile);
outFile << inputBuffer << setprecision(2) << '\t' << dataOutput << endl;
}
}
counter = 1;
- remove(inName.c_str());
+ m->mothurRemove(inName);
renameOk = rename(outName.c_str(), inName.c_str());
//renameFile(outName, inName);