fixed valid parameters to include shared parameter for read.shared command.

[mothur.git] / fastamap.h

diff --git a/fastamap.h b/fastamap.h
index 864a2d03951a9892919dfbdc8641a156e4ef5134..169974b27f107a00ba2a0f7738d7551160a37c62 100644 (file)
--- a/fastamap.h
+++ b/fastamap.h
@@ -12,10 +12,7 @@
  
 using namespace std;
  
-#include <iostream>
-#include <fstream>
-#include <string>
-#include <map>
+#include "mothur.h"
 #include "utilities.hpp"
 
 
@@ -38,6 +35,7 @@ public:
        void clear();
        int size();                                     //returns number of unique sequences
        void print(ostream&);           //produces a 2 column file with the groupname in the first column and the names in the second column.
+       void printCondensedFasta(ostream&);             //produces a fasta file.
        void readFastaFile(ifstream&);
 
 private: