allow user to input quit instead of quit()

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 5057ab02b2962d92ea3814fdfabf5e039eda2dd7..ac09f6ed49bdb074bbe2c6acfd404fef77cc7116 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -35,8 +35,8 @@ class ErrorCheck {
                void clear();
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, ends, processors, size;
-               string templatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, countends, processors, size;
+               string candidatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
                string commandName, optionText;
                bool errorFree;