added reverse.seqs command

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index bbc3050f020c8ae10699bb050acca467363b2acf..7f9e4580bd8b37110c241d438543916ef9f3b9c2 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -33,9 +33,9 @@ class ErrorCheck {
                void validateBinFiles();
                void clear();
                void refresh();
-               string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale;
-
+               string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, countends, processors, size;
+               string candidatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
                string commandName, optionText;
                bool errorFree;