added reverse.seqs command

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 42188c06f18f2eaeec08fbc4fc3f855e95d87cb2..7f9e4580bd8b37110c241d438543916ef9f3b9c2 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -13,7 +13,7 @@
 #include "globaldata.hpp"
 #include "validcommands.h"
 #include "validparameter.h"
-#include "utilities.hpp"
+
 
 class ErrorCheck {
        public:
@@ -30,10 +30,12 @@ class ErrorCheck {
                void validateReadPhil();
                void validateParseFiles();
                void validateTreeFiles();
+               void validateBinFiles();
                void clear();
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted;
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, countends, processors, size;
+               string candidatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
                string commandName, optionText;
                bool errorFree;