void splitAtDash(string&, set<string>&);
void validateReadFiles();
void validateReadDist();
- void validateReadPhil(string);
- void validateParseFiles(string);
+ void validateReadPhil();
+ void validateParseFiles();
void clear();
- string distfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, cutoff, format;
+ string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, cutoff, format;
string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary;
string commandName, optionText;
bool errorFree;