*
*/
-#include <iostream>
-#include <map>
+#include "mothur.h"
#include "globaldata.hpp"
#include "validcommands.h"
#include "validparameter.h"
void clear();
void refresh();
string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format;
- string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree;
+ string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund;
string commandName, optionText;
bool errorFree;
-
+
+ vector<string> sharedGroups;
};
#endif