made sorting optional but sort by default, in case the user wants to see the heatmap...

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 1b023e079cf8ab15c8539596dc72841be7edf7a3..42188c06f18f2eaeec08fbc4fc3f855e95d87cb2 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -9,8 +9,7 @@
  *
  */
 
-#include <iostream>
-#include <map>
+#include "mothur.h"
 #include "globaldata.hpp"
 #include "validcommands.h"
 #include "validparameter.h"
@@ -34,9 +33,10 @@ class ErrorCheck {
                void clear();
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree;
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted;
                string commandName, optionText;
                bool errorFree;
-               
+
+               vector<string> sharedGroups;
 };
 #endif