fixed bug in read.tree updates help and validparameters strings, added ability for...

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 1b023e079cf8ab15c8539596dc72841be7edf7a3..0d6da746edaf0d7d5aad0158aaf8fd41c7656572 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -9,8 +9,7 @@
  *
  */
 
-#include <iostream>
-#include <map>
+#include "mothur.h"
 #include "globaldata.hpp"
 #include "validcommands.h"
 #include "validparameter.h"
@@ -31,12 +30,14 @@ class ErrorCheck {
                void validateReadPhil();
                void validateParseFiles();
                void validateTreeFiles();
+               void validateBinFiles();
                void clear();
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree;
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted;
                string commandName, optionText;
                bool errorFree;
-               
+
+               vector<string> sharedGroups;
 };
 #endif