broke up globaldata and moved error checking and help into commands

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
deleted file mode 100644 (file)
index 7f9e458..0000000
--- a/errorchecking.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef ERRORCHECKING_H
-#define ERRORCHECKING_H
-/*
- *  errorchecking.h
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/2/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "globaldata.hpp"
-#include "validcommands.h"
-#include "validparameter.h"
-
-
-class ErrorCheck {
-       public:
-               ErrorCheck();
-               ~ErrorCheck();
-               bool checkInput(string);
-       
-       private: 
-               GlobalData* globaldata;
-               ValidCommands* validCommand;
-               ValidParameters* validParameter;
-               void validateReadFiles();
-               void validateReadDist();
-               void validateReadPhil();
-               void validateParseFiles();
-               void validateTreeFiles();
-               void validateBinFiles();
-               void clear();
-               void refresh();
-               string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, countends, processors, size;
-               string candidatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
-               string commandName, optionText;
-               bool errorFree;
-
-               vector<string> sharedGroups;
-};
-#endif