reworked amova / homova / anosim

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index 0020a7f8d9d83a24b5b24c60fb0f86263edd5e44..d5846ba65fc287a6b7de3e7f5f6cfaa57a7f5951 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -36,6 +36,7 @@ protected:
        vector<string> options;
        CommandFactory* cFactory;
        MothurOut* mout;
+       string findMothursPath();
 };
 
 
@@ -49,6 +50,7 @@ public:
 private:
        GlobalData* globaldata;
        ifstream inputBatchFile;
+       string getNextCommand(ifstream&);
 
 };