modified mpi code to save ram by writing out every 10 seqs.

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index 3aabf13de009dac3205d00c130d734d98de88dda..74687d2398c84a532b0ba6c68e17ed8cff1f7cf0 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -17,20 +17,22 @@
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
+#include "mothurout.h"
 
 class GlobalData;
 
 class Engine {
 public:
-       Engine() {  cFactory = new CommandFactory();    }
-       virtual ~Engine(){  delete cFactory;  }
+       Engine(); 
+       virtual ~Engine(){}
        virtual bool getInput() = 0;
        virtual string getCommand();
-       vector<string> getOptions() {   return options;         }
-       virtual void terminateCommand(int);
+       virtual string getOutputDir()   {       return cFactory->getOutputDir();  }
+       vector<string> getOptions()             {       return options;         }
 protected:
        vector<string> options;
        CommandFactory* cFactory;
+       MothurOut* mout;
 };