fixed blast code path problem

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index c04cd4ed69306116f7eb72e64bf5fd2e01d92015..276d29267a298dd7c2f52c9b550b3d9b37c555a0 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -13,6 +13,12 @@
 
 
 #include "mothur.h"
+#include "globaldata.hpp"
+#include "commandoptionparser.hpp"
+#include "command.hpp"
+#include "commandfactory.hpp"
+#include "errorchecking.h"
+
 
 using namespace std;
 
@@ -33,7 +39,7 @@ protected:
 
 class BatchEngine : public Engine {
 public:
-       BatchEngine(string);
+       BatchEngine(string, string);
        ~BatchEngine();
        virtual bool getInput();
        int openedBatch;
@@ -47,7 +53,7 @@ private:
 
 class InteractEngine : public Engine {
 public:
-       InteractEngine();
+       InteractEngine(string);
        ~InteractEngine();
        virtual bool getInput();
 private: