#include "commandoptionparser.hpp"
#include "command.hpp"
#include "commandfactory.hpp"
+#include "mothurout.h"
class GlobalData;
virtual ~Engine(){}
virtual bool getInput() = 0;
virtual string getCommand();
- virtual string getOutputDir() { return cFactory->getOutputDir(); }
+ virtual string getOutputDir() { return cFactory->getOutputDir(); }
+ virtual string getLogFileName() { return cFactory->getLogfileName(); }
+ virtual bool getAppend() { return cFactory->getAppend(); }
+
vector<string> getOptions() { return options; }
protected:
vector<string> options;
CommandFactory* cFactory;
+ MothurOut* mout;
};
private:
GlobalData* globaldata;
ifstream inputBatchFile;
+ string getNextCommand(ifstream&);
};