added set.logfile command

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index d3f156e533a6a759bab014250dd1d54ad1726c7b..0020a7f8d9d83a24b5b24c60fb0f86263edd5e44 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -17,6 +17,7 @@
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
+#include "mothurout.h"
 
 class GlobalData;
 
@@ -26,10 +27,15 @@ public:
        virtual ~Engine(){}
        virtual bool getInput() = 0;
        virtual string getCommand();
-       vector<string> getOptions() {   return options;         }
+       virtual string getOutputDir()                   {       return cFactory->getOutputDir();        }
+       virtual string getLogFileName()                 {       return cFactory->getLogfileName();      }
+       virtual bool getAppend()                                {       return cFactory->getAppend();           }
+
+       vector<string> getOptions()             {       return options;         }
 protected:
        vector<string> options;
        CommandFactory* cFactory;
+       MothurOut* mout;
 };