*
*/
+
#include "dist.h"
/**************************************************************************************************/
class eachGapDist : public Dist {
public:
+
+ eachGapDist() {}
+
void calcDist(Sequence A, Sequence B){
int diff = 0;
int length = 0;
string seqA = A.getAligned();
string seqB = B.getAligned();
+
int alignLength = seqA.length();
for(int i=0; i<alignLength; i++){
if(length == 0) { dist = 1.0000; }
else { dist = ((double)diff / (double)length); }
-
}
};