Man page for fastq-sort. Bump version.

[fastq-tools.git] / doc / fastq-grep.1

diff --git a/doc/fastq-grep.1 b/doc/fastq-grep.1
index fb792b40335bac4e5e1ea02463a2bd2d30b68e45..9858553a04da437afa4fb15f71909fca64356250 100644 (file)
--- a/doc/fastq-grep.1
+++ b/doc/fastq-grep.1
@@ -11,16 +11,18 @@ Given a PATTERN, specified as a perl-compatible regular expression, print every
 FASTQ entry with a matching nucleotide sequence.
 
 One ore more FILEs may be specified, otherwise input is read from standard input.
-Input files may be gziped.
 
 .SH OPTIONS
-.TP 
+.TP
 \fB\-i\fR, \fB\-\-id\fR
 Match the read ID (by default, the sequence is matched).
 .TP
 \fB\-v\fR, \fB\-\-invert\-match\fR
 Invert the sense of matching, to select non-matching entries.
 .TP
+\fB\-m\fR, \fB\-\-mismatches=FILE\fR
+Output non-matching entries to the given file.
+.TP
 \fB\-c\fR, \fB\-\-count\fR
 Suppress normal output; instead output the number of matching (or, non-matching,
 with '-v') entries.