added sorted parameter to get.oturep, added error checking to chimera classes in...

[mothur.git] / distancedb.hpp

diff --git a/distancedb.hpp b/distancedb.hpp
index dc4c9a6b46f8ee28b8db5b24b8b0bd083f03d033..b0d46c6629ef1b19ce935f6f93608d2d89c8acd8 100644 (file)
--- a/distancedb.hpp
+++ b/distancedb.hpp
@@ -11,15 +11,14 @@
  */
 
 
-using namespace std;
-
 #include "mothur.h"
 
 class DistanceDB : public Database {
        
 public:
+
        DistanceDB(string, string);
-       Sequence* findClosestSequence(Sequence*);
+       vector<int> findClosestSequences(Sequence*, int);
        
 private:
 
@@ -28,8 +27,8 @@ private:
                int indexNumber;
                float simScore;
        };
+       
        vector<hit> mostSimSequenceVector;
-//     ifstream inputData;
        int searchIndex;
 };