changes to dist.seqs and pairwise.seqs and cluster.classic no longer resizes

[mothur.git] / distancecommand.h

diff --git a/distancecommand.h b/distancecommand.h
index 3b2d345d73fc46244446cd136366869f92a6e6d6..595483d2b3e84aef55478a78bd84906771949e5d 100644 (file)
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -31,9 +31,10 @@ public:
        void help();
        
 private:
-       struct linePair {
+       struct distlinePair {
                int start;
                int end;
+               
        };
        
        Dist* distCalculator;
@@ -43,8 +44,8 @@ private:
 
        int processors, numNewFasta;
        float cutoff;
-       map<int, int> processIDS;   //end line, processid
-       vector<linePair*> lines;
+       vector<int> processIDS;   //end line, processid
+       vector<distlinePair> lines;
        
        bool abort;
        vector<string>  Estimators, outputNames; //holds estimators to be used