added oldfasta and column parameter to dist.seqs so you can append distances to an...

[mothur.git] / distancecommand.h

diff --git a/distancecommand.h b/distancecommand.h
index c1dac1443a4d2a213ab715d79908e6dd76027a62..36a1e24b0986bb24a106fb3b72f6cba17f1acfce 100644 (file)
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -34,8 +34,8 @@ private:
        Dist* distCalculator;
        SequenceDB alignDB;
 
-       string countends, output, fastafile, calc, outputDir;
-       int processors;
+       string countends, output, fastafile, calc, outputDir, oldfastafile, column;
+       int processors, numNewFasta;
        float cutoff;
        map<int, int> processIDS;   //end line, processid
        vector<linePair*> lines;
@@ -49,9 +49,11 @@ private:
        
        #ifdef USE_MPI 
        int driverMPI(int, int, MPI_File&, float);
+       int driverMPI(int, int, string, long&);
        #endif
        
        int convertMatrix(string);
+       bool sanityCheck();
        int convertToLowerTriangle(string);
 
 };