ValidCalculators* validCalculator;
Dist* distCalculator;
SequenceDB* seqDB;
- ofstream out;
+ ofstream out, phylipOut;
ifstream in;
string outputFileName;
string countends;
float cutoff;
void appendFiles(string, string);
- int driver(Dist*, SequenceDB*, int, int, string, float);
+ int driver(Dist*, SequenceDB*, int, int, string, string, float);
};