#include "command.hpp"
-#include "treemap.h"
#include "sharedutilities.h"
#include "readtree.h"
vector<string> setParameters();
string getCommandName() { return "deunique.tree"; }
string getCommandCategory() { return "Hypothesis Testing"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Deunique.tree"; }
+ string getDescription() { return "add the redundant sequence names back into a tree of unique sequences"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
- TreeMap* tmap;
int numUniquesInName;
bool abort;