vector<string> setParameters();
string getCommandName() { return "deunique.seqs"; }
string getCommandCategory() { return "Sequence Processing"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Deunique.seqs"; }
string getDescription() { return "reverse of the unique.seqs command, and creates a fasta file from a fasta and name file"; }
private:
- string fastaFile, nameFile, outputDir;
+ string fastaFile, nameFile, outputDir, countfile;
vector<string> outputNames;
bool abort;
-
- map<string, string> nameMap;
-
- int readNamesFile();
+
};