class DegapSeqsCommand : public Command {
public:
DegapSeqsCommand(string);
+ DegapSeqsCommand();
~DegapSeqsCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
string fastafile, outputDir;
vector<string> outputNames;
vector<string> fastaFileNames;
-
+ map<string, vector<string> > outputTypes;
};
#endif