//allow user to run help
if(option == "help") { help(); abort = true; calledHelp = true; }
+ else if(option == "citation") { citation(); abort = true; calledHelp = true;}
else {
vector<string> myArray = setParameters();
//erase from file list
fastaFileNames.erase(fastaFileNames.begin()+i);
i--;
- }
+ }else { m->setFastaFile(fastaFileNames[i]); }
}
}