fixed a bug in calculating the # of ambig bases

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index 6b05704c693ec902f5ed4bae6e79233e99f5b1cd..fe5c0db5587d9909fdad12d1f65cb916f5901043 100644 (file)
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -9,10 +9,7 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
-#include "utilities.hpp"
 #include "fastamap.h"
 #include "globaldata.hpp"
 
@@ -32,9 +29,9 @@ private:
        GlobalData* globaldata;
        FastaMap* fastamap;
        ifstream in;
-       ofstream out;
-       string filename, outputFileName;
+       ofstream out, outFasta;
+       string filename, outputFileName, outFastafile;
 
 };
 
-#endif
\ No newline at end of file
+#endif