*
*/
-#include <iostream>
-#include <fstream>
#include "command.hpp"
#include "utilities.hpp"
#include "fastamap.h"
GlobalData* globaldata;
FastaMap* fastamap;
ifstream in;
- ofstream out;
- string filename, outputFileName;
+ ofstream out, outFasta;
+ string filename, outputFileName, outFastafile;
};